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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SeqKat" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'SeqKat: Detection of Kataegis'
version: 0.0.9
doi: 10.32614/CRAN.package.SeqKat
abstract: Kataegis is a localized hypermutation occurring when a region is enriched
  in somatic SNVs. Kataegis can result from multiple cytosine deaminations catalyzed
  by the AID/APOBEC family of proteins. This package contains functions to detect
  kataegis from SNVs in BED format. This package reports two scores per kataegic event,
  a hypermutation score and an APOBEC mediated kataegic score. Yousif, F. et al.;
  The Origins and Consequences of Localized and Global Somatic Hypermutation; Biorxiv
  2018 <https://doi.org/10.1101/287839>.
authors:
- family-names: Yousif
  given-names: Fouad
- family-names: Lin
  given-names: Xihui
- family-names: Fan
  given-names: Fan
- family-names: Lalansingh
  given-names: Christopher
- family-names: Macdonald
  given-names: John
- family-names: C. Boutros
  given-names: Paul
  email: pboutros@sbpdiscovery.org
repository: https://theboutroslab.r-universe.dev
repository-code: https://github.com/TheBoutrosLab/package-SeqKat
commit: 464ce2329100335300021eb358e2a2f6bf6d5a75
url: https://github.com/TheBoutrosLab/package-SeqKat
date-released: '2026-03-18'
contact:
- family-names: C. Boutros
  given-names: Paul
  email: pboutros@sbpdiscovery.org