{ "_id": "6a1f0e36b401979e7341d294", "Package": "SeqKat", "Type": "Package", "Title": "Detection of Kataegis", "Version": "0.0.9", "Authors@R": "c(\nperson(\"Fouad\", \"Yousif\", role = \"aut\"),\nperson(\"Xihui\", \"Lin\", role = \"aut\"),\nperson(\"Fan\", \"Fan\", role = \"aut\"),\nperson(\"Christopher\", \"Lalansingh\", role = \"aut\"),\nperson(\"John\", \"Macdonald\", role = \"aut\"),\nperson(\"Paul\", \"C. Boutros\", role = \"cre\", email = \"pboutros@sbpdiscovery.org\")\n)", "URL": "https://github.com/TheBoutrosLab/package-SeqKat", "BugReports": "https://github.com/TheBoutrosLab/package-SeqKat/issues", "Description": "Kataegis is a localized hypermutation occurring when a\nregion is enriched in somatic SNVs. Kataegis can result from\nmultiple cytosine deaminations catalyzed by the AID/APOBEC\nfamily of proteins. This package contains functions to detect\nkataegis from SNVs in BED format. This package reports two\nscores per kataegic event, a hypermutation score and an APOBEC\nmediated kataegic score. Yousif, F. et al.; The Origins and\nConsequences of Localized and Global Somatic Hypermutation;\nBiorxiv 2018 .", "License": "GPL (>= 2)", "RoxygenNote": "6.0.1", "VignetteBuilder": "rmarkdown, knitr", "Repository": "https://theboutroslab.r-universe.dev", "Date/Publication": "2026-03-18 22:17:16 UTC", "RemoteUrl": "https://github.com/theboutroslab/package-seqkat", "RemoteRef": "HEAD", "RemoteSha": "464ce2329100335300021eb358e2a2f6bf6d5a75", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-17 08:56:27 UTC", "User": "root" }, "Author": "Fouad Yousif [aut],\nXihui Lin [aut],\nFan Fan [aut],\nChristopher Lalansingh [aut],\nJohn Macdonald [aut],\nPaul C. Boutros [cre]", "Maintainer": "Paul C. Boutros ", "MD5sum": "760cf74cb550893852d1e32dcf783728", "_user": "theboutroslab", "_type": "src", "_file": "SeqKat_0.0.9.tar.gz", "_fileid": "74c44f9a7c87c837b49614e74794939601915566429feaa81b2ef39905047d03", "_filesize": 994792, "_sha256": "74c44f9a7c87c837b49614e74794939601915566429feaa81b2ef39905047d03", "_created": "2026-05-17T08:56:27.000Z", "_published": "2026-06-02T17:09:10.301Z", "_distro": "noble", "_jobs": [ { "job": 79128332662, "time": 126, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "7041022304" }, { "job": 79128332045, "time": 135, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7041023332" }, { "job": 79128332673, "time": 131, "config": "linux-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7041022811" }, { "job": 79128332932, "time": 126, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7041022413" }, { "job": 79128333302, "time": 193, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7041027676" }, { "job": 79128332411, "time": 250, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "7041034676" }, { "job": 79128332464, "time": 125, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7041020558" }, { "job": 79128332785, "time": 278, "config": "macos-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7041036493" }, { "job": 79128331680, "time": 175, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7041007410" }, { "job": 79128331635, "time": 114, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7364677070" }, { "job": 79128332315, "time": 135, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7041023234" }, { "job": 79128332793, "time": 113, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7041020740" }, { "job": 79128332517, "time": 182, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7041028763" } ], "_buildurl": "https://github.com/r-universe/theboutroslab/actions/runs/25986385869", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/theboutroslab/package-seqkat", "_commit": { "id": "464ce2329100335300021eb358e2a2f6bf6d5a75", "author": "Yash Patel <86321070+yashpatel6@users.noreply.github.com>", "committer": "GitHub ", "message": "Merge pull request #3 from TheBoutrosLab/yashpatel-name-static-analysis\n\nSet CICD job name to static-analysis from CICD-base", "time": 1773872236 }, "_maintainer": { "name": "Paul C. Boutros", "email": "pboutros@sbpdiscovery.org", "login": "pboutros", "twitter": "@theboutroslab", "description": "", "uuid": 7833438 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.15.1", "role": "Depends" }, { "package": "foreach", "role": "Depends" }, { "package": "doParallel", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 0.11.0", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "doMC", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" } ], "_owner": "theboutroslab", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-04", "n": 2 }, { "week": "2026-12", "n": 1 } ], "_tags": [], "_stars": 0, "_contributors": [ { "user": "nwiltsie", "count": 4, "uuid": 829731 }, { "user": "rhughwhite", "count": 3, "uuid": 61213624 }, { "user": "yashpatel6", "count": 3, "uuid": 86321070 } ], "_userbio": { "uuid": 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